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Merged
merged 8 commits into from
Jul 16, 2025
Merged

Output weight matrix #866

merged 8 commits into from
Jul 16, 2025

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@varndorfer
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@varndorfer varndorfer commented Jun 24, 2025 •
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Description

Output the weight matrix and srcIndex matrix every epoch for Neuro simulations. Also added a script to convert the weight matrix output to graphml for input into subsequent simulations

Checklist (Mandatory for new features)

  • Added Documentation
  • Added Unit Tests

Testing (Mandatory for all changes)

  • GPU Test: test-medium-connected.xml Passed
  • GPU Test: test-large-long.xml Passed

@varndorfer varndorfer requested a review from stiber June 24, 2025 13:46
stiber
stiber requested changes Jun 30, 2025
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Minor tweaks. I assume there will be another PR with the Python code that reformats output for insertion into GraphML?

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stiber commented Jun 30, 2025

Now that I think about it, this is just for collecting data from STDP. What about the code for outputting from ConnGrowth at the end of a simulation?

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varndorfer commented Jul 2, 2025

Now that I think about it, this is just for collecting data from STDP. What about the code for outputting from ConnGrowth at the end of a simulation?

The ConnGrowth changes are in this PR by Haripriya so I wasn't sure if I should add that here as well: #796

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varndorfer commented Jul 2, 2025

Minor tweaks. I assume there will be another PR with the Python code that reformats output for insertion into GraphML?

Yes, I'll add the GraphML generation script to the scripts/python folder in my GraphSystemsAnalysis PR: UWB-Biocomputing/GraphSystemsAnalysis#27

@varndorfer varndorfer changed the title Output ConnStatic weight matrix Output weight matrix Jul 4, 2025
@varndorfer varndorfer merged commit 6428101 into SharedDevelopment Jul 16, 2025
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@stiber stiber stiber approved these changes

@priyadhanu14 priyadhanu14 priyadhanu14 approved these changes

@marinarosenwald marinarosenwald marinarosenwald approved these changes

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@varndorfer @stiber @priyadhanu14 @marinarosenwald